PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000281.1_g00019.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 389aa    MW: 42244.2 Da    PI: 8.1805
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000281.1_g00019.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0016149172123
                              EEETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                              y+C+ Cg+ F    +L++H+   H
  Itr_sc000281.1_g00019.1 149 YPCTLCGEIFLAANLLEQHQFIkH 172
                              99*****************98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.432149177IPR007087Zinc finger, C2H2
PROSITE patternPS000280151172IPR007087Zinc finger, C2H2
SuperFamilySSF563998.73E-14174388No hitNo description
Gene3DG3DSA:3.90.228.109.7E-10184388IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MAKPTSLRPL FSTFLSLLGL LLLHLGCFFF SSSAAAVADH DRPEPPRQNS GRNRKSSSSS  60
SRLKRSTAGA VSASWSFVKR IFSCAAAAGG GGGGTPPPHP SIPSPCSSSR SLTKPIVIPL  120
ASPEKLSSDP LSGDICSDQP NIPLRNNIYP CTLCGEIFLA ANLLEQHQFI KHAVSELVDG  180
DSGNNIVQII FKTGWPDTAK NPAIRRILKI HNSPKILARF EEYREHVKSK AARNVAGRRR  240
DERCIADGNE LLRFHCATFL CDLGENGGCA TSGICSNQYC SVCGIIKTGF SPKMDGISTQ  300
SSGWRAHAAV PEEIEEEFKF MHVKRAMLVC RVIAGRVGSD PDVVDKDDPG FDSLVGRENG  360
AHPRLDEEEE LWVFNPRAVL PCFVIVYNV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009773098.11e-169PREDICTED: uncharacterized protein LOC104223368
RefseqXP_016491454.11e-169PREDICTED: uncharacterized protein LOC107811098
TrEMBLA0A0V0HZJ01e-152A0A0V0HZJ0_SOLCH; Putative ovule protein
TrEMBLK4CA401e-152K4CA40_SOLLC; Uncharacterized protein
TrEMBLM1CZA01e-152M1CZA0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000780311e-152(Solanum tuberosum)
STRINGSolyc06g076820.1.11e-152(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118341821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-100C2H2 family protein